Just start with the longest length the programs say and then run test tones. Where the driver moves the least amount is the tuning frequency of the enclosure.
For some odd reason when I built my Maelstrom in 283L using 3ea 4" ports LSPCad (which Adire uses) gave me a much longer port length than the other programs. I used 3 programs and got 3 different lengths so I ended up tuning them by using test tones. It turns out that my desired tuning point...